Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs1474417 chr11:73496138 C/T 2.58E-6 364 19.27 21.2 1.87 KM Plot
LIHC rs147921682 chr11:99405100 TG/T 1.35E-14 367 20.03 16.7 2.62 KM Plot
LIHC rs148545765 chr11:107170305 G/GC 8.32E-6 366 19.83 19.17 1.87 KM Plot
LIHC rs149597835 chr11:132240457 G/A 5.29E-5 364 19.58 22.43 2.17 KM Plot
LIHC rs149918687 chr5:145669957 G/GA 7.21E-5 367 19.53 21.2 13.13 KM Plot
LIHC rs151178854 chr2:158939572 A/G 5.0E-6 354 21.02 14.23 9.07 KM Plot
LIHC rs1532723 chr12:101307210 A/G 0 368 0.47 19.95 19.57 KM Plot
LIHC rs1599529 chr13:76627658 A/T 3.82E-13 368 20.03 17.78 0.63 KM Plot
LIHC rs16890963 chr8:41809431 C/T 4.16E-13 368 19.53 20.27 0.63 KM Plot
LIHC rs16920357 chr9:4007769 A/C 3.73E-5 368 19.7 18.95 NA KM Plot
LIHC rs17020005 chr2:37095206 T/C 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs17020024 chr2:37105178 G/A 9.47E-6 366 20.45 12.17 8.73 KM Plot
LIHC rs17020072 chr2:37155315 G/A 1.5E-5 364 20.5 12.17 8.73 KM Plot
LIHC rs17020074 chr2:37156191 C/T 1.68E-5 362 20.4 12.17 8.73 KM Plot
LIHC rs17020084 chr2:37178623 G/C 9.29E-6 365 20.6 12.68 8.73 KM Plot